PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 261aa    MW: 28620.8 Da    PI: 6.5126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-1693139455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A++Y+k+Lq
  XP_004499048.1  93 FHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIDYLKQLQ 139
                     5*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-2086149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-2088149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.87989138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-1892143No hitNo description
PfamPF000101.9E-1394139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1895144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASSHDDSQD FSNLFNQFID PNLNHSASDY NNPSSPSFHF SHPYPNSSTI PNFPNFTSSS  60
SSSAQNAEAS ELPSSKGTSP PRSSSKRGRA AEFHNLSEKR RRSKINEKMK ALQNLIPNSN  120
KTDKASMLDE AIDYLKQLQL QVQMLMMRNG FSLHPMSLSG GPRPMMFSPT ELNLDEGNGF  180
PNSITAVASS ANDECLARPA FTFPEQCSIS NQSVIPPMTN LATFDTSPSF QPSMKDAVYN  240
SMPQLILDTT RIGKTPSPDV S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477271e-91BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499048.10.0PREDICTED: transcription factor ALC-like isoform X1
TrEMBLG7I3I41e-108G7I3I4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA14G09231.12e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-26bHLH family protein